God does not have to be at odds with what we learn from science. We need to reinterpret our ideas of God from direct mystical experience, and I think we'll find our science and spirituality are One.
The ideas we have about God are not God. Any idea, thought, or concept never was and never will be God. They may be helpful symbols that point to God, metaphors, analogies, allegories, images, but they are not God as God is. They will inevitably conflict with one another and be fallible, as every symbol eventually fails at actually being the thing it is supposed to represent. The symbol is never the thing-in-itself.